Reads statistics:
Total number of reads:	2383956
Total number of bases:	85822416
Average read length:	36
Total number of reads (+incompelte reads):	2672316
Total number of bases (+incomplete reads):	91012767
Number of different reads:	1119743
Some reads have more than 65535 copies:	False

Read length (for mapping):	26

Reads coverage:
Reads:	C:\Mark_R\Run_3_Sequences\run_3_lane_1.filelist
Ref-sequence:	F:\sequencing\reads\PhiX\phi_plus_SNPs_old.txt
Length of ref-sequence:	5386
Nucleotides in ref-sequence:	10772
Unknown base-pairs in ref-sequence:	0
Coverage of reads:	5754.07

Perfectly Mapped:
Total reads mapped with 0-MM:	 885029
Total reads mapped with 0-MM (of total):	 0.371244
Different reads mapped with 0-MM:	 10532
Remaining reads:	 1498927
Remaining reads (of total):	 0.628756
Remaining different reads:	 1109211

Mapping remaining with 1 change:
Total reads mapped with 1-MM:	 488027
Total reads mapped with 1-MM (of total):	 0.204713
Different reads mapped with 1-MM:	 183104
Remaining reads:	 1010900
Remaining reads (of total):	 0.424043
Remaining different reads:	 926107

Mapping remaining with 2 changes:
Total reads mapped with 2-MM:	 290907
Total reads mapped with 2-MM (of total):	 0.122027
Different reads mapped:	 241717
Remaining reads:	 719993
Remaining reads (of total):	 0.302016
Remaining different reads:	 684390

Final Result:
Total reads mapped:	 1663963
Total reads mapped (of total):	 0.697984
Total reads not-mapped:	 719993
Total reads not-mapped (of total):	 0.302016